PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004496797.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family M-type_MADS
Protein Properties Length: 233aa    MW: 26436.2 Da    PI: 9.6705
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004496797.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF72.24.5e-231664149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    k+ +n+sn qvtfskRr g++KKA+EL++LC+aev +i+fs+  k++ +
  XP_004496797.1 16 KKMSNESNLQVTFSKRRSGLFKKASELCTLCGAEVVLIVFSPGEKVFSF 64
                    5689***************************************999887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.8E-34867IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.231868IPR002100Transcription factor, MADS-box
CDDcd002651.57E-35977No hitNo description
SuperFamilySSF554551.96E-28984IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-201030IPR002100Transcription factor, MADS-box
PfamPF003195.1E-241864IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-203045IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-204566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MSTEKKGRGR QKIEIKKMSN ESNLQVTFSK RRSGLFKKAS ELCTLCGAEV VLIVFSPGEK  60
VFSFGHPNVD TVINRYLSRV PLQHNGTMQF IEAHRNANVR ELNEALTQAN NQLDTEKKHG  120
DELSHLRKTT EAQFWWACPI DVMSKAQLEV FKKALEELKK LVAQHADMIV IQGAPTQTLP  180
IFVGNASTSN NAIHPHQRQV QMYPSQYFQN PMMQPHWFGF NNTGGGYGPT EFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A6e-16976168Myocyte-specific enhancer factor 2A
3kov_B6e-16976168Myocyte-specific enhancer factor 2A
3kov_I6e-16976168Myocyte-specific enhancer factor 2A
3kov_J6e-16976168Myocyte-specific enhancer factor 2A
3p57_A6e-16976168Myocyte-specific enhancer factor 2A
3p57_B6e-16976168Myocyte-specific enhancer factor 2A
3p57_C6e-16976168Myocyte-specific enhancer factor 2A
3p57_D6e-16976168Myocyte-specific enhancer factor 2A
3p57_I6e-16976168Myocyte-specific enhancer factor 2A
3p57_J6e-16976168Myocyte-specific enhancer factor 2A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004496797.11e-177PREDICTED: agamous-like MADS-box protein AGL62
SwissprotQ9FKK22e-64AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLG7L6X51e-129G7L6X5_MEDTR; MADS-box transcription factor family protein
STRINGGLYMA20G27330.15e-88(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-57AGAMOUS-like 62